It is a tool for centrality comparison using dimensional reduction algorithmsĬytoHubba is a Java plugin for Cytoscape, a facilitated platform for the analysis and visualization of molecular interaction networks based on web application, Hubba.ĭensity of Maximum Neighborhood Component (DMNC)ĭouble Screening Scheme (DSS) of MNC || DMNC It is an R package available on CRAN repository specialized for network centrality analysis. Use pathway topology information to assign weight to pathway nodes. Shannon-entropy based diversity coefficientĬentiLib is a Java-library for the computation and investigation of weighted and unweighted centralities in biological networks.įind the most important nodes in a network, calculating centrality parameters for each node.Ĭentrality-based pathway enrichment. These measures are increasingly used to characterize structural and functional brain connectivity datasets. The BCT contains a large selection of complex network measures in Matlab. AllegroGraph supports SPARQL, RDFS++, and Prolog reasoning from numerous client applications. AllegroGraph uses efficient memory utilization in combination with disk-based storage, enabling it to scale to billions of quads while maintaining superior performance. AllegroGraph® is a modern, high-performance, persistent graph database.
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